/usr/local/phylogeny/phyml/bin/phyml-nt.sh: line 25: : command not found /usr/local/phylogeny/phyml/bin/phyml-nt.sh: line 80: sed s/-.$//: No such file or directory /usr/local/phylogeny/phyml/bin/phyml -i input_files/20110203_145108.txt -d nt -b 0 -f e -m -c 1 -o lr -C 4 -a \;rm shit -a e . The file 'input_files/20110203_145108.txt' does not exist. . Type any key to exit.