/usr/local/phylogeny/phyml/bin/phyml -i input_files/20110209_183935.phy -d codon -b 0 -f e --mechanistic "/usr/local/phylogeny/phyml/dat/Wmatrix_with_EI-11_JTT EI-11" -c 1 --mechanistic_opt 01000 -o lr --mechanistic_params "1.0 0.0 0.0 100 1.0 1.0 1.0 1.0 1.0 0.25 0.25 0.25" ; rm shit


. The file 'input_files/20110209_183935.phy' does not exist.

. Type any key to exit.

rm: cannot remove `shit': No such file or directory