/usr/local/phylogeny/phyml/phyml-20100824-sm10/src/phyml -i input_files/20130703_161224/input.phy -d aa -b 0 --mechanistic_opt 11023 -o l --mechanistic_params "-9.0 -1.5 0.0 0.0001 1.0 1.0 1.0 1.0 1.0 0.25 0.25 0.25" --mechanistic "/usr/local/phylogeny/phyml/dat/Wmatrix_with_EI-11_JTT JTT-ML91+mod-0" -f e -c 1 --rate_var_over_sites --output_tree_trace
/usr/local/phylogeny/phyml/bin/phyml-aa.sh: line 872: /usr/local/phylogeny/phyml/phyml-20100824-sm10/src/phyml: No such file or directory